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Run DSD
Enter PPIs at each line, where two interactors are separated by space or comma
Use
Example 1
Example 2
Example 3
Upload PPI file
PPI File
input format;
one example
Options for Extracting Connected Component:
force to calculate for the whole graph
Options for Output Format:
DSD matrix
DSD list
top list,
number of top nodes:
verbose
Options for DSD Calculation:
length of random walks:
Converged DSD
The package can be downloaded
here
, where more information is provided. If you use DSD, please cite:
Cao M, Zhang H, Park J, Daniels NM, Crovella ME, Cowen LJ, Hescott B. (2013) Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks. PLoS ONE 8(10): e76339. doi:10.1371/journal.pone.0076339
DSD was supported in part by NSF and NIH grants
Webserver by
Mengfei Cao
