input format: Input file must be a list of PPIs where each PPI takes one line and interactors are separated by comma/tab/space. If your input file is a spreadsheet in a matrix, you can try to use the PPIconvert program in DSD package to convert your file into a PPI list file.
force (f) : If checked, force DSD to calculate DSD between all pairs of nodes regardless of connectedness; otherwise only calculate for the largest connected component. Disabled, namely for the largest component by default.
Verbose(-v): Sets verbosity of feedback to stdout or log file. A value of 1 will only display errors and warnings, and 0 will display a list of chains as they are loaded. Default value is 1.
DSD matrix: Output DSD in a matrix
DSD list: Output DSD for each PPI in input list
rank list: Output a ranked DSD list for each node
k(-k <NTOP>): number of nodes with lowest DSD if chosen to output a ranked list for each node with NTOP nodes with lowest DSD
nRW(-n <NRW>): length of random walks
Converged DSD: Calculate the converged DSD, ignore the settings for length of random walks if checked.